The classic fear is that a refrigerant leak at the evaporator coil can allow refrigerant to hit a hot heat exhanger and convert to an unpleasant (if not unhealthy) gas. Also, if the evaporator coil's condensate collection system isn't working properly, the blower can suck up the water and spray it all over the heat exchanger, accelerating corrosion. It seems I remember a requirement that the coiling coil be located down stream from the furnace but the only bad outcome I can think of is accelerated corrosion.